Resources and tools for the study of Bordetella

Posts tagged Tools

Mauve

Mauve

How to use Mauve to align genomes and identify orthologs? ordetella species encode on their genomes multiple copies of insertion sequences (IS) elements. In species such as Bordetella pertussis, identical repeats of IS481 can be present in over 200 times and comprise over 6% of the total genome. These sequences provide sites for homologous recombination which are […]

New tutorial available

We just built a new tutorial explaining how to visualize gene expression data using KEGG metabolic models. The tutorial can be found here.

Databases and tools

Databases and tools

Databases: GOLD: Genome Online Database Biocyc Pathways Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathways Ortholog list The genomes of various strains and species have been aligned using Mauve. The list of orthologs can be downloaded below. Bordetella pertussis: Mauve alignment; List of orthologs Bordetella bronchiseptica: Mauve alignment; List of orthologs Bordetella parapertussis: Mauve alignment; List of orthologs